Index

A

add_embryo_sex_to_column_name() (in module snp_haplotyper.snp_haplotype) add_rsid_column() (in module snp_haplotyper.snp_haplotype) annotate_distance_from_gene() (in module snp_haplotyper.snp_haplotype)

annotate_snp_position() (in module snp_haplotyper.snp_haplotype) ArgumentInputError autosomal_dominant_analysis() (in module snp_haplotyper.autosomal_dominant_logic) autosomal_recessive_analysis() (in module snp_haplotyper.autosomal_recessive_logic)

C

calculate_nocall_percentages() (in module snp_haplotyper.snp_haplotype)

calculate_qc_metrics() (in module snp_haplotyper.snp_haplotype) categorise_embryo_alleles() (in module snp_haplotyper.snp_haplotype)

D

detect_miscall_or_ado() (in module snp_haplotyper.snp_haplotype)

E

Error

export_json_data_as_csv() (in module snp_haplotyper.snp_haplotype)

F

filter_out_nocalls() (in module snp_haplotyper.snp_haplotype) filter_snps_by_catergory() (in module snp_haplotyper.snp_plot)

filter_snps_by_partner_sex() (in module snp_haplotyper.snp_plot) filter_snps_by_region() (in module snp_haplotyper.snp_plot)

H

header_to_dict() (in module snp_haplotyper.snp_haplotype)

I

InvalidParameterSelectedError

M

main() (in module snp_haplotyper.snp_haplotype) module snp_haplotyper snp_haplotyper.autosomal_dominant_logic snp_haplotyper.autosomal_recessive_logic snp_haplotyper.exceptions snp_haplotyper.snp_haplotype snp_haplotyper.snp_plot snp_haplotyper.x_linked_logic

P

plot_results() (in module snp_haplotyper.snp_plot)

produce_html_table() (in module snp_haplotyper.snp_haplotype)

S

snp_haplotyper module snp_haplotyper.autosomal_dominant_logic module snp_haplotyper.autosomal_recessive_logic module snp_haplotyper.exceptions module snp_haplotyper.snp_haplotype module

snp_haplotyper.snp_plot module snp_haplotyper.x_linked_logic module snps_by_region() (in module snp_haplotyper.snp_haplotype) summarise_embryo_results() (in module snp_haplotyper.snp_haplotype) summarise_snps_per_embryo() (in module snp_haplotyper.snp_plot) summarise_snps_per_embryo_pretty() (in module snp_haplotyper.snp_haplotype) summarised_snps_by_region() (in module snp_haplotyper.snp_haplotype)

X

x_linked_analysis() (in module snp_haplotyper.x_linked_logic)